Color Alignment by Properties
How to color a protein alignment by properties
- Paste a protein alignment in FASTA format, with gaps written as -.
- Each residue is colored by its chemistry, with a key above the alignment.
- Download saves the colored alignment as a web page.
Frequently asked questions
Which colors are used?
Hydrophobic (A V L I M F W Y), acidic (D E), basic (K R H), polar (S T N Q), glycine and proline, and cysteine each have their own color.
Is my sequence uploaded?
No. Everything runs in your browser, so your sequences never leave your device.
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